FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index16_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 18983132 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 4899415 | 3.004507 | 4.8179407 | 2 |
| CCAGG | 3947720 | 2.5416558 | 5.226703 | 1 |
| AAGAA | 4049110 | 2.5372975 | 5.0183167 | 2 |
| CTTCT | 4161030 | 2.520584 | 5.6310806 | 1 |
| CCTGG | 3921585 | 2.5099432 | 6.0135517 | 1 |
| CTGGA | 3760120 | 2.4000268 | 8.784693 | 1 |
| CTGCT | 3749660 | 2.334765 | 5.1635966 | 1 |
| TCCAG | 3699925 | 2.3174605 | 5.6721716 | 2 |
| CTCCT | 3731800 | 2.2802093 | 7.865151 | 1 |
| CTGGG | 3450625 | 2.2505825 | 8.454441 | 1 |
| CAGGA | 3437585 | 2.2071707 | 5.372061 | 1 |
| CTTCA | 3600105 | 2.1937327 | 5.831443 | 1 |
| CTCCA | 3510615 | 2.1577828 | 8.337727 | 1 |
| CCCAG | 3410065 | 2.1544585 | 7.3889933 | 1 |
| CAGAA | 3325965 | 2.089861 | 5.1748085 | 1 |
| CTCTG | 3225010 | 2.0080862 | 6.405281 | 1 |
| CTGCA | 3134310 | 1.9631857 | 5.012091 | 1 |
| CTGGC | 2922295 | 1.8703648 | 5.4984508 | 1 |
| TGGAA | 2903815 | 1.8483977 | 5.133552 | 2 |
| CTGAA | 2955010 | 1.845825 | 5.5967684 | 1 |
| CTCAG | 2762610 | 1.7303702 | 6.3796864 | 1 |
| CTTTG | 2747845 | 1.6962407 | 5.102403 | 1 |
| CTTGG | 2584160 | 1.6397047 | 5.4453707 | 1 |
| CTGGT | 2581655 | 1.6381152 | 5.1145706 | 1 |
| CTCCC | 2499260 | 1.5403657 | 5.0220113 | 1 |